plotEnrichGroup

Visualize GO enrichment results for a specific expression pattern

Usage

plotEnrichGroup(enrich_obj, terms = NULL, n = 10)

Arguments

enrich_obj

An enrichResult object (from enrichPattern()) or one element of a group enrichment list

terms

Character vector of GO IDs to display. If NULL, top n terms are shown.

n

Number of top terms to show if terms = NULL (default: 10)

Value

A ggplot2 object of the bubble plot

Details

This function takes an enrichment result from enrichPattern() or group-enrichment list, selects user-defined GO terms (or top-ranked ones), and generates a bubble plot summarizing the enrichment. Gene ratio is shown on the x-axis, enriched terms on the y-axis, point size represents gene count, and color represents adjusted q-value.

Author

Zhicheng Ji, Changxin Wan, Beijie Ji