enrichPattern

Flexible GO enrichment for one, multiple, or all temporal patterns

Usage

enrichPattern(
  gene.group,
  patterns = NULL,
  species = "mouse",
  ont = "BP",
  universe = NULL,
  ...
)

Arguments

gene.group

A data frame indicating genes and their assigned temporal patterns

patterns

Character vector of patterns to analyze (e.g., c("I","D")), or NULL to analyze all patterns

species

"mouse" or "human"

ont

One of "BP", "MF", "CC", or "ALL"

universe

Background set of genes (default: NULL → auto-detected)

...

Additional arguments passed to enrichment function

Value

A named list of enrichResult objects, one per pattern

Details

This function performs enrichment analysis for user-specified patterns. If no pattern is provided, all patterns in gene.group will be analyzed

Author

Zhicheng Ji, Changxin Wan, Beijie Ji