PseudotimeHeatmapMS

Generate heatmap for multi-sample Pseudotimecascade result

Usage

PseudotimeHeatmapMS(x, gl, annotation, interval, ...)

Arguments

x

A gene expression matrix

gl

Marked gene list

annotation

Annotation matrix for genes in expression matrix

interval

A list of switch point index data.frames (one per sample), or a single data.frame. Each element should have rows as genes and columns as samples, containing switch point indices (with NA allowed).

...

parameters passed to Heatmap

Value

A ComplexHeatmap object

Details

Input a gene expression matrix and annotation matrixes, output a heatmap. Sample-level switch points are overlaid as points, and the corresponding confidence intervals across samples are shown as line segments.

Author

Zhicheng Ji, Changxin Wan, Beijie Ji