PseudotimeHeatmap

Generate heatmap for Pseudotimecascade result

Usage

PseudotimeHeatmap(x, gl, annotation, show_sp = FALSE, switch_point = NULL, ...)

Arguments

x

A gene expression matrix

gl

Marked gene list

annotation

Annotation matrix for genes in expression matrix

show_sp

Logical; whether to overlay switch points on the heatmap (default: FALSE).

switch_point

Named character vector of switch points for each gene (e.g., "12,35"). Names should match rownames(x); values are comma-separated column indices.

...

parameters passed to Heatmap

Value

A ComplexHeatmap object

Details

Input a gene expression matrix and annotation matrixes, output a heatmap. Optionally, switch points can be overlaid on the heatmap as dots when show_sp = TRUE.

Author

Zhicheng Ji, Changxin Wan, Beijie Ji