Pseudotimecascade visualizes gene expression cascade in pseudotime analysis • Pseudotimecascade

Visualizes gene expression cascade in pseudotime analysis

Depends

R (>= 3.5.0)
ComplexHeatmap
VGAM
circlize
dplyr
ggplot2
clusterProfiler
org.Hs.eg.db
org.Mm.eg.db

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install(c("ComplexHeatmap", "clusterProfiler", "org.Hs.eg.db", "org.Mm.eg.db"))

install.packages(c("VGAM", "circlize", "dplyr", "ggplot2"))

if (!require("devtools"))
  install.packages("devtools")
devtools::install_github("changxinw/Pseudotimecascade")

Example

Please refer to example folder for a Seurat example.